Older stuff (gapcode.py, web utilities)
Simple utilites for phylogenetics:
- gapcode.py, a python script for coding indels in sequence alignments as binary characters for phylogeny reconstruction (version 2.1, 13 Jan 2008; thanks to Pieter Pelser for helpful suggestions)
- Convert newick trees and data to Pagel format (Discrete, Multistate, etc.)
- Create PDF or EPS figures of trees